IL_1VQP_045

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

GU*AAUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_045 not in the Motif Atlas

Homologous match to IL_4V9F_045

Geometric discrepancy: 0.0574

The information below is about IL_4V9F_045

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_76709.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1VQP|1|0|G|1269
1VQP|1|0|U|1270
*
1VQP|1|0|A|1286
1VQP|1|0|A|1287
1VQP|1|0|U|1288
1VQP|1|0|C|1289

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32E