IL_1VQP_048

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

1VQP|1|0|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_048 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.0357

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

1VQP|1|0|G|1312
1VQP|1|0|A|1313
1VQP|1|0|U|1314
1VQP|1|0|G|1315
1VQP|1|0|G|1316
1VQP|1|0|A|1317
1VQP|1|0|A|1318
1VQP|1|0|G|1319
*
1VQP|1|0|U|1338
1VQP|1|0|G|1339
1VQP|1|0|G|1340
1VQP|1|0|A|1341
1VQP|1|0|C|1342

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain Y

50S ribosomal protein L32E