IL_1VQP_054

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_054 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.1526

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

1VQP|1|0|C|1521
1VQP|1|0|A|1522
1VQP|1|0|G|1523
1VQP|1|0|U|1524
1VQP|1|0|G|1525
1VQP|1|0|A|1526
1VQP|1|0|A|1527
1VQP|1|0|A|1528
1VQP|1|0|G|1529
*
1VQP|1|0|C|1662
1VQP|1|0|G|1663
1VQP|1|0|A|1664
1VQP|1|0|G|1665

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P