3D structure

PDB id
1VQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.25 Å

Loop

Sequence
CGCAAAU*ACUCGUACG
Length
16 nucleotides
Bulged bases
1VQP|1|0|A|1857, 1VQP|1|0|C|1872, 1VQP|1|0|C|1876
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQP_065 not in the Motif Atlas
Homologous match to IL_4V9F_065
Geometric discrepancy: 0.0461
The information below is about IL_4V9F_065
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

1VQP|1|0|C|1854
1VQP|1|0|G|1855
1VQP|1|0|C|1856
1VQP|1|0|A|1857
1VQP|1|0|A|1858
1VQP|1|0|A|1859
1VQP|1|0|U|1860
*
1VQP|1|0|A|1869
1VQP|1|0|C|1870
1VQP|1|0|U|1871
1VQP|1|0|C|1872
1VQP|1|0|G|1873
1VQP|1|0|U|1874
1VQP|1|0|A|1875
1VQP|1|0|C|1876
1VQP|1|0|G|1877

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain A
50S ribosomal protein L2P
Chain Z
50S ribosomal protein L37Ae

Coloring options:


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