IL_1VQP_065

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1VQP|1|0|A|1857, 1VQP|1|0|C|1872, 1VQP|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0461

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1VQP|1|0|C|1854
1VQP|1|0|G|1855
1VQP|1|0|C|1856
1VQP|1|0|A|1857
1VQP|1|0|A|1858
1VQP|1|0|A|1859
1VQP|1|0|U|1860
*
1VQP|1|0|A|1869
1VQP|1|0|C|1870
1VQP|1|0|U|1871
1VQP|1|0|C|1872
1VQP|1|0|G|1873
1VQP|1|0|U|1874
1VQP|1|0|A|1875
1VQP|1|0|C|1876
1VQP|1|0|G|1877

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae