IL_1VQP_071

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1VQP|1|0|G|1979, 1VQP|1|0|U|1985, 1VQP|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_071 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0762

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1VQP|1|0|C|1975
1VQP|1|0|G|1976
1VQP|1|0|U|1977
1VQP|1|0|A|1978
1VQP|1|0|G|1979
1VQP|1|0|U|1980
1VQP|1|0|A|1981
1VQP|1|0|C|1982
1VQP|1|0|C|1983
1VQP|1|0|U|1984
1VQP|1|0|U|1985
1VQP|1|0|G|1986
*
1VQP|1|0|C|2002
1VQP|1|0|U|2003
1VQP|1|0|U|2004
1VQP|1|0|G|2005

Current chains

Chain 0

23S ribosomal rna

Nearby chains