3D structure

PDB id
1VQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.25 Å

Loop

Sequence
UUC*GUGAG
Length
8 nucleotides
Bulged bases
1VQP|1|0|G|2611, 1VQP|1|0|A|2612
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQP_086 not in the Motif Atlas
Geometric match to IL_4V9F_087
Geometric discrepancy: 0.0489
The information below is about IL_4V9F_087
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

1VQP|1|0|U|2545
1VQP|1|0|U|2546
1VQP|1|0|C|2547
*
1VQP|1|0|G|2609
1VQP|1|0|U|2610
1VQP|1|0|G|2611
1VQP|1|0|A|2612
1VQP|1|0|G|2613

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain B
50S ribosomal protein L3P
Chain K
50S ribosomal protein L14P

Coloring options:


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