IL_1VQP_091

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_091 not in the Motif Atlas

Homologous match to IL_4V9F_092

Geometric discrepancy: 0.0509

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1VQP|1|0|A|2689
1VQP|1|0|U|2690
1VQP|1|0|A|2691
1VQP|1|0|G|2692
1VQP|1|0|U|2693
1VQP|1|0|A|2694
1VQP|1|0|C|2695
*
1VQP|1|0|G|2700
1VQP|1|0|G|2701
1VQP|1|0|A|2702
1VQP|1|0|A|2703
1VQP|1|0|C|2704
1VQP|1|0|U|2705

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain E

50S ribosomal protein L6P

Chain K

50S ribosomal protein L14P