IL_1VVJ_007

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

1VVJ|1|QA|G|129|||A, 1VVJ|1|QA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_007 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.1882

The information below is about IL_6CZR_119

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

1VVJ|1|QA|U|129
1VVJ|1|QA|G|129|||A
1VVJ|1|QA|A|130
1VVJ|1|QA|C|131
*
1VVJ|1|QA|G|231
1VVJ|1|QA|G|232

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20