IL_1VVJ_022

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

1VVJ|1|QA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_022 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1189

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

1VVJ|1|QA|C|569
1VVJ|1|QA|G|570
1VVJ|1|QA|U|571
1VVJ|1|QA|A|572
1VVJ|1|QA|A|573
1VVJ|1|QA|A|574
1VVJ|1|QA|G|575
*
1VVJ|1|QA|C|880
1VVJ|1|QA|G|881

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QE

30S ribosomal protein S5

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17