IL_1VVJ_030

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_030 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.1115

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

1VVJ|1|QA|G|673
1VVJ|1|QA|G|674
1VVJ|1|QA|A|675
1VVJ|1|QA|A|676
1VVJ|1|QA|U|677
*
1VVJ|1|QA|G|713
1VVJ|1|QA|G|714
1VVJ|1|QA|A|715
1VVJ|1|QA|A|716
1VVJ|1|QA|C|717

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QF

30S ribosomal protein S6

Chain QK

30S ribosomal protein S11

Chain QR

30S ribosomal protein S18

Chain RD

50S ribosomal protein L2