IL_1VVJ_037

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_037 not in the Motif Atlas

Homologous match to IL_6CZR_149

Geometric discrepancy: 0.2382

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

1VVJ|1|QA|G|933
1VVJ|1|QA|C|934
1VVJ|1|QA|A|935
1VVJ|1|QA|C|936
*
1VVJ|1|QA|G|1379
1VVJ|1|QA|U|1380
1VVJ|1|QA|U|1381
1VVJ|1|QA|C|1382
1VVJ|1|QA|C|1383
1VVJ|1|QA|C|1384

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QV

Transfer RNA; tRNA