IL_1VVJ_041

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

1VVJ|1|QA|C|1200, 1VVJ|1|QA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_041 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1296

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

1VVJ|1|QA|G|1057
1VVJ|1|QA|G|1058
*
1VVJ|1|QA|U|1199
1VVJ|1|QA|C|1200
1VVJ|1|QA|A|1201
1VVJ|1|QA|G|1202
1VVJ|1|QA|C|1203

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14