IL_1VVJ_074

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_074 not in the Motif Atlas

Geometric match to IL_4WF9_017

Geometric discrepancy: 0.0951

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

1VVJ|1|RA|C|564
1VVJ|1|RA|C|565
1VVJ|1|RA|U|566
*
1VVJ|1|RA|A|575
1VVJ|1|RA|U|576
1VVJ|1|RA|G|577

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L33

Chain RP

50S ribosomal protein L15

Chain RU

50S ribosomal protein L20

Chain RV

50S ribosomal protein L21