IL_1VVJ_083

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_083 not in the Motif Atlas

Homologous match to IL_7RQB_024

Geometric discrepancy: 0.1241

The information below is about IL_7RQB_024

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_92001.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

1VVJ|1|RA|C|837
1VVJ|1|RA|C|838
*
1VVJ|1|RA|G|940
1VVJ|1|RA|A|941
1VVJ|1|RA|G|942

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

tRNA acceptor end mimic

Chain RP

50S ribosomal protein L15