RNA 3D Hub //

Motif IL_92001.1 Version IL_92001.1 of this group appears in releases 3.77 to 3.86

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-53-4
1 IL_2QWY_0082QWY0.72210Single stack bendCSAM-II riboswitchC43U44A45*U21G22cWWcWW
2 IL_6FZ0_0016FZ00.70180Single stack bendASAM-V riboswitchC46U47A48*U20G21cWWcWW
3 IL_3MOJ_0043MOJ0.88860Single stack bendA LSU rRNAC2540A2541A2542*U2522G2523cWWcWW
4 IL_7A0S_0227A0S0.83290Single stack bendX LSU rRNAG951A952G953*C850C851cWWcWW
5 IL_4WF9_0284WF90.86870Single stack bendX LSU rRNAG984A985G986*C882C883cWWcWW
6 IL_7RQB_0247RQB0.86620Single stack bend1A LSU rRNAG940A941G942*C837C838cWWcWW
7 IL_5J7L_2665J7L0.85040Single stack bendDA LSU rRNAG940A941G942*C837C838cWWncWW
8 IL_5IBB_3405IBB0.75220Single base bend1L tRNAG63U64C65*G50C51cWWcWW
9 IL_7A0S_0247A0S0.68520X LSU rRNAU942U943A944*U860G861cWWcWW
10 IL_5J7L_2675J7L0.00001Other ILDA LSU rRNAA844A845||AU847||A*A933U934cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*CC4
CUA*UG2
CAA*UG1
GUC*GC1
UUA*UG1
AU*AAUU1
Non-Watson-Crick part of the motif
SequenceCounts
A*5
U*4
*AU1

Release history

Release3.773.783.793.803.813.823.833.843.853.86
Date2023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-17
StatusNew id, > 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single stack bend (7)
  • Single base bend (1)
  • Other IL (1)
  • (1)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.45 | Max 0.89
    Help

    Coloring options:

    IL_2QWY_008:IL_2QWY_008 = 0IL_2QWY_008:IL_6FZ0_001 = 0.1076IL_2QWY_008:IL_3MOJ_004 = 0.4497IL_2QWY_008:IL_7A0S_022 = 0.4724IL_2QWY_008:IL_4WF9_028 = 0.5617IL_2QWY_008:IL_7RQB_024 = 0.5407IL_2QWY_008:IL_5J7L_266 = 0.5259IL_2QWY_008:IL_5IBB_340 = 0.4098IL_2QWY_008:IL_7A0S_024 = 0.8056IL_2QWY_008:IL_5J7L_267 = 0.7221IL_6FZ0_001:IL_2QWY_008 = 0.1076IL_6FZ0_001:IL_6FZ0_001 = 0IL_6FZ0_001:IL_3MOJ_004 = 0.4463IL_6FZ0_001:IL_7A0S_022 = 0.4493IL_6FZ0_001:IL_4WF9_028 = 0.5421IL_6FZ0_001:IL_7RQB_024 = 0.5249IL_6FZ0_001:IL_5J7L_266 = 0.5009IL_6FZ0_001:IL_5IBB_340 = 0.3908IL_6FZ0_001:IL_7A0S_024 = 0.7589IL_6FZ0_001:IL_5J7L_267 = 0.7018IL_3MOJ_004:IL_2QWY_008 = 0.4497IL_3MOJ_004:IL_6FZ0_001 = 0.4463IL_3MOJ_004:IL_3MOJ_004 = 0IL_3MOJ_004:IL_7A0S_022 = 0.2637IL_3MOJ_004:IL_4WF9_028 = 0.309IL_3MOJ_004:IL_7RQB_024 = 0.347IL_3MOJ_004:IL_5J7L_266 = 0.3447IL_3MOJ_004:IL_5IBB_340 = 0.4383IL_3MOJ_004:IL_7A0S_024 = 0.7247IL_3MOJ_004:IL_5J7L_267 = 0.8886IL_7A0S_022:IL_2QWY_008 = 0.4724IL_7A0S_022:IL_6FZ0_001 = 0.4493IL_7A0S_022:IL_3MOJ_004 = 0.2637IL_7A0S_022:IL_7A0S_022 = 0IL_7A0S_022:IL_4WF9_028 = 0.1447IL_7A0S_022:IL_7RQB_024 = 0.1659IL_7A0S_022:IL_5J7L_266 = 0.1373IL_7A0S_022:IL_5IBB_340 = 0.3361IL_7A0S_022:IL_7A0S_024 = 0.6312IL_7A0S_022:IL_5J7L_267 = 0.8329IL_4WF9_028:IL_2QWY_008 = 0.5617IL_4WF9_028:IL_6FZ0_001 = 0.5421IL_4WF9_028:IL_3MOJ_004 = 0.309IL_4WF9_028:IL_7A0S_022 = 0.1447IL_4WF9_028:IL_4WF9_028 = 0IL_4WF9_028:IL_7RQB_024 = 0.1072IL_4WF9_028:IL_5J7L_266 = 0.1335IL_4WF9_028:IL_5IBB_340 = 0.398IL_4WF9_028:IL_7A0S_024 = 0.6515IL_4WF9_028:IL_5J7L_267 = 0.8687IL_7RQB_024:IL_2QWY_008 = 0.5407IL_7RQB_024:IL_6FZ0_001 = 0.5249IL_7RQB_024:IL_3MOJ_004 = 0.347IL_7RQB_024:IL_7A0S_022 = 0.1659IL_7RQB_024:IL_4WF9_028 = 0.1072IL_7RQB_024:IL_7RQB_024 = 0IL_7RQB_024:IL_5J7L_266 = 0.0871IL_7RQB_024:IL_5IBB_340 = 0.3806IL_7RQB_024:IL_7A0S_024 = 0.6655IL_7RQB_024:IL_5J7L_267 = 0.8662IL_5J7L_266:IL_2QWY_008 = 0.5259IL_5J7L_266:IL_6FZ0_001 = 0.5009IL_5J7L_266:IL_3MOJ_004 = 0.3447IL_5J7L_266:IL_7A0S_022 = 0.1373IL_5J7L_266:IL_4WF9_028 = 0.1335IL_5J7L_266:IL_7RQB_024 = 0.0871IL_5J7L_266:IL_5J7L_266 = 0IL_5J7L_266:IL_5IBB_340 = 0.3447IL_5J7L_266:IL_7A0S_024 = 0.6351IL_5J7L_266:IL_5J7L_267 = 0.8504IL_5IBB_340:IL_2QWY_008 = 0.4098IL_5IBB_340:IL_6FZ0_001 = 0.3908IL_5IBB_340:IL_3MOJ_004 = 0.4383IL_5IBB_340:IL_7A0S_022 = 0.3361IL_5IBB_340:IL_4WF9_028 = 0.398IL_5IBB_340:IL_7RQB_024 = 0.3806IL_5IBB_340:IL_5J7L_266 = 0.3447IL_5IBB_340:IL_5IBB_340 = 0IL_5IBB_340:IL_7A0S_024 = 0.6166IL_5IBB_340:IL_5J7L_267 = 0.7522IL_7A0S_024:IL_2QWY_008 = 0.8056IL_7A0S_024:IL_6FZ0_001 = 0.7589IL_7A0S_024:IL_3MOJ_004 = 0.7247IL_7A0S_024:IL_7A0S_022 = 0.6312IL_7A0S_024:IL_4WF9_028 = 0.6515IL_7A0S_024:IL_7RQB_024 = 0.6655IL_7A0S_024:IL_5J7L_266 = 0.6351IL_7A0S_024:IL_5IBB_340 = 0.6166IL_7A0S_024:IL_7A0S_024 = 0IL_7A0S_024:IL_5J7L_267 = 0.6852IL_5J7L_267:IL_2QWY_008 = 0.7221IL_5J7L_267:IL_6FZ0_001 = 0.7018IL_5J7L_267:IL_3MOJ_004 = 0.8886IL_5J7L_267:IL_7A0S_022 = 0.8329IL_5J7L_267:IL_4WF9_028 = 0.8687IL_5J7L_267:IL_7RQB_024 = 0.8662IL_5J7L_267:IL_5J7L_266 = 0.8504IL_5J7L_267:IL_5IBB_340 = 0.7522IL_5J7L_267:IL_7A0S_024 = 0.6852IL_5J7L_267:IL_5J7L_267 = 0IL_2QWY_008IL_6FZ0_001IL_3MOJ_004IL_7A0S_022IL_4WF9_028IL_7RQB_024IL_5J7L_266IL_5IBB_340IL_7A0S_024IL_5J7L_267Discrepancy0.000.200.400.600.80
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