IL_1VVJ_098
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 1VVJ|1|RA|A|1127, 1VVJ|1|RA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VVJ_098 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.3153
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
1VVJ|1|RA|G|1024
1VVJ|1|RA|G|1025
1VVJ|1|RA|U|1026
1VVJ|1|RA|A|1027
1VVJ|1|RA|A|1028
1VVJ|1|RA|A|1029
1VVJ|1|RA|G|1030
*
1VVJ|1|RA|C|1124
1VVJ|1|RA|G|1125
1VVJ|1|RA|A|1126
1VVJ|1|RA|A|1127
1VVJ|1|RA|A|1128
1VVJ|1|RA|A|1129
1VVJ|1|RA|U|1130
1VVJ|1|RA|G|1131
1VVJ|1|RA|A|1132
1VVJ|1|RA|U|1133
1VVJ|1|RA|C|1135
1VVJ|1|RA|G|1136
1VVJ|1|RA|G|1137
1VVJ|1|RA|G|1138
1VVJ|1|RA|G|1139
1VVJ|1|RA|C|1140
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RB
- 5S ribosomal RNA; 5S rRNA
- Chain RE
- 50S ribosomal protein L3
- Chain RN
- 50S ribosomal protein L13
- Chain RQ
- 50S ribosomal protein L16
Coloring options: