Motif IL_50715.1 Version IL_50715.1 of this group appears in releases 3.77 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 1-21 | 2-20 | 3-19 | 6-7 | 13-16 | 14-15 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_281 | 5J7L | 0.1173 | 3 | DA | LSU rRNA | G | 1124 | G | 1125 | A | 1126 | G | 1128 | A | 1129 | G | 1131 | U | 1132 | A | 1133 | C | 1135 | G | 1136 | G | 1137 | G | 1138 | G | 1139 | C | 1140 | * | G | 1024 | G | 1025 | G | 1026 | A | 1027 | A | 1028 | A | 1029 | C | 1030 | cWW | tSH | tHH | cSH | tWW | cWW |
| 2 | IL_4WF9_040 | 4WF9 | 0.0000 | 3 | X | LSU rRNA | C | 1168 | G | 1169 | A | 1170 | A | 1172 | A | 1173 | G | 1175 | U | 1176 | A | 1177 | C | 1179 | G | 1180 | G | 1181 | G | 1182 | G | 1183 | C | 1184 | * | G | 1068 | G | 1069 | A | 1070 | A | 1071 | A | 1072 | A | 1073 | G | 1074 | cWW | tSH | tHH | cSH | tWW | cWW |
| 3 | IL_7A0S_037 | 7A0S | 0.4194 | 2 | X | LSU rRNA | C | 1135 | G | 1136 | A | 1137 | A | 1139 | A | 1140 | U | 1141 | A | 1143 | U | 1144 | C | 1145 | G | 1146 | G | 1147 | G | 1148 | G | 1149 | C | 1150 | * | G | 1035 | G | 1036 | U | 1037 | U | 1038 | A | 1039 | A | 1040 | G | 1041 | cWW | tSH | tHH | tWW | cWW | |
| 4 | IL_7RQB_040 | 7RQB | 0.4477 | 2 | 1A | LSU rRNA | C | 1124 | G | 1125 | A | 1126 | A | 1128 | A | 1129 | U | 1130 | A | 1132 | U | 1133 | C | 1135 | G | 1136 | G | 1137 | G | 1138 | G | 1139 | C | 1140 | * | G | 1024 | G | 1025 | U | 1026 | A | 1027 | A | 1028 | A | 1029 | G | 1030 | cWW | tSH | tHH | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAGAUGUAACGGGGC*GGGAAAC | 1 |
| CGAAAAUGUACCGGGGC*GGAAAAG | 1 |
| CGAAAAUGAUCGGGGC*GGUUAAG | 1 |
| CGAAAAUGAUCGGGGC*GGUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAUGUAACGGGG*GGAAA | 1 |
| GAAAAUGUACCGGGG*GAAAA | 1 |
| GAAAAUGAUCGGGG*GUUAA | 1 |
| GAAAAUGAUCGGGG*GUAAA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Heat map statistics
- Min 0.12 | Avg 0.30 | Max 0.66
Coloring options: