IL_1VVJ_110

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

1VVJ|1|RA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_110 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0771

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

1VVJ|1|RA|C|1351
1VVJ|1|RA|U|1352
1VVJ|1|RA|A|1353
1VVJ|1|RA|A|1354
1VVJ|1|RA|G|1355
*
1VVJ|1|RA|C|1376
1VVJ|1|RA|G|1377
1VVJ|1|RA|A|1378
1VVJ|1|RA|A|1379
1VVJ|1|RA|G|1380

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L35

Chain RD

50S ribosomal protein L2