IL_1VVJ_111

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_111 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.2229

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

1VVJ|1|RA|U|1357
1VVJ|1|RA|G|1358
1VVJ|1|RA|A|1359
1VVJ|1|RA|A|1360
1VVJ|1|RA|G|1361
*
1VVJ|1|RA|C|1370
1VVJ|1|RA|G|1371
1VVJ|1|RA|U|1372
1VVJ|1|RA|A|1373
1VVJ|1|RA|G|1374

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain R7

50S ribosomal protein L35

Chain RD

50S ribosomal protein L2