IL_17136.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-7	3-8	4-7	5-6
1	IL_4WF9_019	4WF9	0.8005	0	AAA cross-strand stack	X	LSU rRNA	U	649	U	650	A	651	A	652	G	653	*	U	663	G	664	G	665	A	666	G	667	cWW	ntWW			tHS	cWW
2	IL_7A0S_013	7A0S	0.8291	0	AAA cross-strand stack	X	LSU rRNA	U	616	U	617	A	618	A	619	G	620	*	C	629	G	630	G	631	A	632	G	633	cWW				tHS	cWW
3	IL_7RQB_016	7RQB	0.7938	0	AAA cross-strand stack	1A	LSU rRNA	U	606	U	607	A	608	A	609	G	610	*	C	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
4	IL_5J7L_258	5J7L	0.8339	0	AAA cross-strand stack	DA	LSU rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622	cWW	ntWH			tHS	cWW
5	IL_4V9F_020	4V9F	0.8373	0	AAA cross-strand stack	0	LSU rRNA	C	663	U	664	A	665	A	666	C	667	*	G	679	G	680	G	681	A	682	G	683	cWW	ntWH			tHS	cWW
6	IL_5TBW_118	5TBW	0.7916	1	UAA/GAN related	1	LSU rRNA	U	3054	U	3055	U	3056	U	3057	G	3059	*	C	3084	G	3085	A	3086	A	3087	G	3088	cWW				ntWS	cWW
7	IL_8C3A_127	8C3A	0.9490	1	UAA/GAN related	1	LSU rRNA	C	3056	G	3057	A	3058	A	3059	G	3060	*	U	3026	U	3027	U	3028	U	3029	G	3031	cWW	ntSW	tHW			cWW
8	IL_2R8S_006	2R8S	0.6080	0	UAA/GAN variation	R	P4-P6 RNA RIBOZYME DOMAIN	U	253	G	254	C	255	A	256	G	257	*	C	216	C	217	A	218	A	219	G	220	cWW	tSH			tHS	cWW
9	IL_4V9F_022	4V9F	0.2427	0	tSH-tHW-tHS	0	LSU rRNA	C	719	G	720	A	721	G	722	G	723	*	C	705	G	706	C	707	A	708	G	709	cWW	tSH		tHW	tHS	cWW
10	IL_4V9F_055	4V9F	0.2194	0	tSH-tHW-tHS	0	LSU rRNA	U	1639	C	1640	A	1641	A	1642	C	1643	*	G	1542	G	1543	U	1544	C	1545	G	1546	cWW	tSH		tHW	tHS	cWW
11	IL_8C3A_428	8C3A	0.1863	0	tSH-tHW-tHS	CM	SSU rRNA	U	953	C	954	A	955	A	956	G	957	*	C	625	G	626	U	627	A	628	G	629	cWW	tSH		tHW	tHS	cWW
12	IL_4V88_418	4V88	0.1725	0	tSH-tHW-tHS	A6	SSU rRNA	U	968	C	969	A	970	A	971	G	972	*	C	627	G	628	U	629	A	630	G	631	cWW	tSH		tHW	tHS	cWW
13	IL_4V88_436	4V88	0.1651	0	tSH-tHW-tHS	A6	SSU rRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW	tSH		tHW	tHS	cWW
14	IL_8C3A_442	8C3A	0.1555	0	tSH-tHW-tHS	CM	SSU rRNA	C	975	G	976	A	977	A	978	G	979	*	C	995	G	996	U	997	A	998	G	999	cWW	tSH		tHW	tHS	cWW
15	IL_5J7L_037	5J7L	0.1741	0	tSH-tHW-tHS	AA	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH		tHW	tHS	cWW
16	IL_4LFB_033	4LFB	0.1731	0	tSH-tHW-tHS	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH		tHW	tHS	cWW
17	IL_6CZR_145	6CZR	0.1774	0	tSH-tHW-tHS	1a	SSU rRNA	C	763	A	764	A	765	A	766	C	767	*	G	783	G	784	U	785	A	786	G	787	cWW	tSH		tHW	tHS	cWW
18	IL_6CZR_135	6CZR	0.0000	0	tSH-tHW-tHS	1a	SSU rRNA	U	741	G	742	A	743	G	744	G	745	*	U	564	G	565	U	566	A	567	G	568	cWW	tSH		tHW	ntHS	cWW
19	IL_4LFB_023	4LFB	0.1276	0	tSH-tHW-tHS	A	SSU rRNA	U	757	G	758	A	759	G	760	G	761	*	U	580	G	581	U	582	A	583	G	584	cWW	tSH		tHW	tHS	cWW
20	IL_5J7L_027	5J7L	0.1832	0	tSH-tHW-tHS	AA	SSU rRNA	U	757	C	758	A	759	G	760	G	761	*	C	580	G	581	C	582	A	583	G	584	cWW	tSH		tHW	tHS	cWW
21	IL_4WF9_052	4WF9	0.2140	0	tSH-tHW-tHS	X	LSU rRNA	U	1394	G	1395	A	1396	G	1397	G	1398	*	C	1407	G	1408	U	1409	A	1410	G	1411	cWW			ntHW	ntHS	cWW
22	IL_5J7L_293	5J7L	0.2596	0	tSH-tHW-tHS	DA	LSU rRNA	C	1357	G	1358	A	1359	G	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH		tHW	tHS	cWW
23	IL_7A0S_049	7A0S	0.2649	0	tSH-tHW-tHS	X	LSU rRNA	U	1370	G	1371	A	1372	G	1373	G	1374	*	C	1383	G	1384	C	1385	A	1386	G	1387	cWW	tSH		tHW	tHS	cWW
24	IL_7RQB_053	7RQB	0.2961	0	tSH-tHW-tHS	1A	LSU rRNA	U	1357	G	1358	A	1359	A	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH		ntWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAAC*GGUAG	3
UUAAG*CGGAG	2
UCAAG*CGUAG	2
CGAAG*CGUAG	2
UGAGG*UGUAG	2
UUAAG*UGGAG	1
UUAAC*GGGAG	1
CUAAC*GGGAG	1
UUUUUG*CGAAG	1
CGAAG*UUUUUG	1
UGCAG*CCAAG	1
CGAGG*CGCAG	1
UCAAC*GGUCG	1
UCAGG*CGCAG	1
UGAGG*CGUAG	1
CGAGG*CGUAG	1
UGAGG*CGCAG	1
UGAAG*CGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GGA	5
GAG*GUA	4
GAA*GUA	3
AAA*GUA	3
GAG*GCA	2
CAA*GUA	2
UUUU*GAA	1
GAA*UUUU	1
GCA*CAA	1
CAA*GUC	1
CAG*GCA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_17136.1 Version IL_17136.1 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_17136.1 Version IL_17136.1 of this group appears in releases 3.80 to 3.86

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Csv

Json