IL_1VVJ_119

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_119 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5505

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

1VVJ|1|RA|U|1482
1VVJ|1|RA|G|1483
*
1VVJ|1|RA|C|1506
1VVJ|1|RA|A|1507
1VVJ|1|RA|A|1508
1VVJ|1|RA|C|1509
1VVJ|1|RA|A|1510
1VVJ|1|RA|A|1511
1VVJ|1|RA|G|1512

Current chains

Chain RA

23S rRNA

Nearby chains