Motif IL_52493.1 Version IL_52493.1 of this group appears in releases 3.77 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7RQB_061 | 7RQB | 0.7523 | 2 | 1A | LSU rRNA | C | 1506 | A | 1507 | A | 1509|||A | A | 1509|||B | G | 1510 | * | U | 1481 | G | 1482 | cWW | cWW |
| 2 | IL_1NTA_004 | 1NTA | 0.0000 | 1 | B+A | RNA (18-mer) | A | 105 | C | 106 | C | 107 | A | 108 | G | 110 | * | C | 18 | U | 19 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACAAG*UG | 1 |
| ACCACG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACAA* | 1 |
| CCAC* | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-cWW-L-L
- Heat map statistics
- Min 0.75 | Avg 0.38 | Max 0.75
Coloring options: