IL_1VVJ_148

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_148 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.3725

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1VVJ|1|RA|U|2401
1VVJ|1|RA|C|2402
1VVJ|1|RA|C|2403
*
1VVJ|1|RA|G|2414
1VVJ|1|RA|G|2415

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain R6

50S ribosomal protein L34

Chain R8

tRNA acceptor end mimic

Chain RP

50S ribosomal protein L15