IL_1VVJ_167

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_167 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1348

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

1VVJ|1|RA|U|2847
1VVJ|1|RA|G|2848
1VVJ|1|RA|U|2849
1VVJ|1|RA|A|2850
1VVJ|1|RA|A|2851
1VVJ|1|RA|G|2852
*
1VVJ|1|RA|U|2865
1VVJ|1|RA|U|2866
1VVJ|1|RA|G|2867
1VVJ|1|RA|A|2868
1VVJ|1|RA|G|2869

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RT

50S ribosomal protein L19