IL_1VVJ_181

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

1VVJ|1|XA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_181 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.121

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

1VVJ|1|XA|G|148
1VVJ|1|XA|A|149
1VVJ|1|XA|C|150
1VVJ|1|XA|A|151
1VVJ|1|XA|A|152
1VVJ|1|XA|C|153
*
1VVJ|1|XA|G|168
1VVJ|1|XA|C|169
1VVJ|1|XA|U|170
1VVJ|1|XA|A|171
1VVJ|1|XA|A|172
1VVJ|1|XA|U|173
1VVJ|1|XA|C|174

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20