IL_1VVJ_183

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

1VVJ|1|XA|U|244, 1VVJ|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_183 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.105

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

1VVJ|1|XA|C|242
1VVJ|1|XA|A|243
1VVJ|1|XA|U|244
1VVJ|1|XA|C|245
1VVJ|1|XA|A|246
1VVJ|1|XA|G|247
*
1VVJ|1|XA|C|277
1VVJ|1|XA|G|278
1VVJ|1|XA|A|279
1VVJ|1|XA|C|280
1VVJ|1|XA|G|281
1VVJ|1|XA|A|282
1VVJ|1|XA|C|283
1VVJ|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17