IL_1VVJ_217

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

1VVJ|1|XA|U|1257, 1VVJ|1|XA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_217 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1285

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

1VVJ|1|XA|G|1255
1VVJ|1|XA|A|1256
1VVJ|1|XA|U|1257
1VVJ|1|XA|G|1258
*
1VVJ|1|XA|C|1277
1VVJ|1|XA|U|1278
1VVJ|1|XA|A|1279
1VVJ|1|XA|A|1280
1VVJ|1|XA|U|1281
1VVJ|1|XA|C|1282

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14