3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
GAAC*GAGUGAAAUAGAGC
Length
18 nucleotides
Bulged bases
1VVJ|1|YA|U|504, 1VVJ|1|YA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VVJ_243 not in the Motif Atlas
Homologous match to IL_7RQB_014
Geometric discrepancy: 0.0921
The information below is about IL_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.6
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

1VVJ|1|YA|G|481
1VVJ|1|YA|A|482
1VVJ|1|YA|A|483
1VVJ|1|YA|C|484
*
1VVJ|1|YA|G|496
1VVJ|1|YA|A|497
1VVJ|1|YA|G|498
1VVJ|1|YA|U|499
1VVJ|1|YA|G|500
1VVJ|1|YA|A|501
1VVJ|1|YA|A|502
1VVJ|1|YA|A|503
1VVJ|1|YA|U|504
1VVJ|1|YA|A|505
1VVJ|1|YA|G|506
1VVJ|1|YA|A|507
1VVJ|1|YA|G|508
1VVJ|1|YA|C|509

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YW
50S ribosomal protein L22
Chain YY
50S ribosomal protein L24

Coloring options:


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