Motif IL_60992.6 Version IL_60992.6 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11		12	break		13		14		15		16	1-16	2-14	2-15	3-10	4-8	5-9	10-13	11-14	12-13
1	IL_8C3A_015	8C3A	0.3208	2	1	LSU rRNA	G	390	A	391	G	392	U	393	G	394	A	395	A	396	A	397	A	399	G	400	U	401	C	403	*	G	376	A	377	A	378	C	379	cWW	ncWS	tSH	ncWB	tWH	tSH	ntSS		cWW
2	IL_5TBW_014	5TBW	0.2543	2	1	LSU rRNA	G	390	A	391	G	392	U	393	G	394	A	395	A	396	A	397	A	399	G	400	U	401	C	403	*	G	376	A	377	A	378	C	379	cWW	ncWS	tSH	cWB	tWH	tSH	tSS		cWW
3	IL_4WF9_015	4WF9	0.1279	2	X	LSU rRNA	G	541	A	542	G	543	U	544	G	545	A	546	A	547	A	548	A	550	G	551	A	552	C	554	*	G	527	C	528	A	529	C	530	cWW	cWS	tSH	cWB	tWH	ntSH	tSS		cWW
4	IL_7RQB_014	7RQB	0.0000	2	1A	LSU rRNA	G	496	A	497	G	498	U	499	G	500	A	501	A	502	A	503	A	505	G	506	A	507	C	509	*	G	481	A	482	A	483	C	484	cWW	cWS	tSH	cWB	tWH	tSH	tSS	ntHH	cWW
5	IL_5J7L_255	5J7L	0.1249	2	DA	LSU rRNA	G	496	A	497	G	498	U	499	G	500	A	501	A	502	A	503	A	505	G	506	A	507	C	509	*	G	481	A	482	A	483	C	484	cWW	cWS	tSH	cWB	tWH	tSH	tSS	ntHH	cWW
6	IL_7A0S_009	7A0S	0.1464	2	X	LSU rRNA	G	506	A	507	G	508	U	509	G	510	A	511	A	512	A	513	A	515	G	516	A	517	C	519	*	G	492	A	493	A	494	C	495	cWW	cWS	tSH	cWB	tWH	ntSH	tSS	ntHH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAGUGAAAAAGUAC*GAAC	2
GAGUGAAAUAGAAC*GCAC	1
GAGUGAAAUAGAGC*GAAC	1
GAGUGAAAAAGAAC*GAAC	1
GAGUGAAAGAGAAC*GAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUGAAAAAGUA*AA	2
AGUGAAAUAGAA*CA	1
AGUGAAAUAGAG*AA	1
AGUGAAAAAGAA*AA	1
AGUGAAAGAGAA*AA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Heat map statistics: Min 0.09 | Avg 0.18 | Max 0.36

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