IL_1VVJ_272

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

1VVJ|1|YA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_272 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2668

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

1VVJ|1|YA|G|1087
1VVJ|1|YA|A|1088
1VVJ|1|YA|G|1089
1VVJ|1|YA|U|1090
1VVJ|1|YA|G|1091
*
1VVJ|1|YA|C|1100
1VVJ|1|YA|U|1101
1VVJ|1|YA|C|1102

Current chains

Chain YA

23S rRNA

Nearby chains