IL_1VVJ_275

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

1VVJ|1|YA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_275 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1246

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

1VVJ|1|YA|C|1208
1VVJ|1|YA|G|1209
1VVJ|1|YA|A|1210
1VVJ|1|YA|U|1211
1VVJ|1|YA|G|1212
1VVJ|1|YA|A|1213
1VVJ|1|YA|A|1214
1VVJ|1|YA|G|1215
*
1VVJ|1|YA|U|1234
1VVJ|1|YA|G|1235
1VVJ|1|YA|G|1236
1VVJ|1|YA|A|1237
1VVJ|1|YA|G|1238

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YU

50S ribosomal protein L20