IL_1VVJ_330
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VVJ_330 not in the Motif Atlas
- Geometric match to IL_7RQB_103
- Geometric discrepancy: 0.1797
- The information below is about IL_7RQB_103
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
1VVJ|1|YA|C|2652
1VVJ|1|YA|U|2653
1VVJ|1|YA|A|2654
1VVJ|1|YA|G|2655
1VVJ|1|YA|U|2656
1VVJ|1|YA|A|2657
1VVJ|1|YA|C|2658
*
1VVJ|1|YA|G|2663
1VVJ|1|YA|G|2664
1VVJ|1|YA|A|2665
1VVJ|1|YA|C|2666
1VVJ|1|YA|C|2667
1VVJ|1|YA|G|2668
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YH
- 50S ribosomal protein L6
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