Motif IL_16458.1 Version IL_16458.1 of this group appears in releases 3.77 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-5 | 5-10 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3IGI_011 | 3IGI | 0.5777 | 1 | 8x6 Sarcin-Ricin with inserted A; G-bulge | A | Group IIC intron | C | 296 | U | 298 | A | 299 | G | 300 | U | 301 | A | 302 | C | 303 | * | G | 316 | G | 317 | A | 318 | A | 319 | G | 320 | G | 321 | cWW | ncWW | ntHH | tWH | tHS | cWW | |
| 2 | IL_4WF9_100 | 4WF9 | 0.0000 | 0 | Sarcin-Ricin target in LSU H95; G-bulge | X | LSU rRNA | U | 2679 | U | 2680 | A | 2681 | G | 2682 | U | 2683 | A | 2684 | C | 2685 | * | G | 2690 | G | 2691 | A | 2692 | C | 2693 | C | 2694 | G | 2695 | cWW | tWH | tHS | cWW | |||
| 3 | IL_7RQB_103 | 7RQB | 0.1147 | 0 | Sarcin-Ricin target in LSU H95; G-bulge | 1A | LSU rRNA | C | 2652 | U | 2653 | A | 2654 | G | 2655 | U | 2656 | A | 2657 | C | 2658 | * | G | 2663 | G | 2664 | A | 2665 | C | 2666 | C | 2667 | G | 2668 | cWW | cSH | tWH | tHS | cWW | ||
| 4 | IL_5J7L_346 | 5J7L | 0.1355 | 0 | Sarcin-Ricin target in LSU H95; G-bulge | DA | LSU rRNA | C | 2652 | U | 2653 | A | 2654 | G | 2655 | U | 2656 | A | 2657 | C | 2658 | * | G | 2663 | G | 2664 | A | 2665 | C | 2666 | C | 2667 | G | 2668 | cWW | cSH | tWH | tHS | cWW | ||
| 5 | IL_7A0S_094 | 7A0S | 0.1220 | 0 | Sarcin-Ricin target in LSU H95; G-bulge | X | LSU rRNA | C | 2631 | U | 2632 | A | 2633 | G | 2634 | U | 2635 | A | 2636 | C | 2637 | * | G | 2642 | G | 2643 | A | 2644 | C | 2645 | C | 2646 | G | 2647 | cWW | cSH | tWH | tHS | cWW | ||
| 6 | IL_4V9F_019 | 4V9F | 0.1994 | 0 | 7x6 Sarcin-Ricin; G-bulge | 0 | LSU rRNA | C | 585 | C | 586 | A | 587 | G | 588 | U | 589 | A | 590 | A | 591 | * | U | 567 | G | 568 | A | 569 | C | 570 | C | 571 | G | 572 | cWW | cWB | cSH | tWH | tHS | cWW | |
| 7 | IL_1UN6_004 | 1UN6 | 0.2432 | 0 | 7x6 Sarcin-Ricin with UU cWW pair; G-bulge | F | 5S RIBOSOMAL RNA | U | 72 | U | 73 | A | 74 | G | 75 | U | 76 | A | 77 | C | 78 | * | G | 98 | G | 99 | A | 100 | A | 101 | U | 102 | A | 103 | cWW | cwW | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAGUAC*GGACCG | 3 |
| CAUAGUAC*GGAAGG | 1 |
| UUAGUAC*GGACCG | 1 |
| CCAGUAA*UGACCG | 1 |
| UUAGUAC*GGAAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUA*GACC | 4 |
| AUAGUA*GAAG | 1 |
| CAGUA*GACC | 1 |
| UAGUA*GAAU | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Sarcin-Ricin target in LSU H95; G-bulge (4)
- 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
- 8x6 Sarcin-Ricin with inserted A; G-bulge (1)
- 7x6 Sarcin-Ricin; G-bulge (1)
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.24 | Max 0.59
Coloring options: