Motif IL_16458.1 Version IL_16458.1 of this group appears in releases 3.77 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13	1-13	2-12	3-11	4-5	5-10	6-9	7-8
1	IL_3IGI_011	3IGI	0.5777	1	8x6 Sarcin-Ricin with inserted A; G-bulge	A	Group IIC intron	C	296	U	298	A	299	G	300	U	301	A	302	C	303	*	G	316	G	317	A	318	A	319	G	320	G	321	cWW	ncWW	ntHH		tWH	tHS	cWW
2	IL_4WF9_100	4WF9	0.0000	0	Sarcin-Ricin target in LSU H95; G-bulge	X	LSU rRNA	U	2679	U	2680	A	2681	G	2682	U	2683	A	2684	C	2685	*	G	2690	G	2691	A	2692	C	2693	C	2694	G	2695	cWW				tWH	tHS	cWW
3	IL_7RQB_103	7RQB	0.1147	0	Sarcin-Ricin target in LSU H95; G-bulge	1A	LSU rRNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668	cWW			cSH	tWH	tHS	cWW
4	IL_5J7L_346	5J7L	0.1355	0	Sarcin-Ricin target in LSU H95; G-bulge	DA	LSU rRNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668	cWW			cSH	tWH	tHS	cWW
5	IL_7A0S_094	7A0S	0.1220	0	Sarcin-Ricin target in LSU H95; G-bulge	X	LSU rRNA	C	2631	U	2632	A	2633	G	2634	U	2635	A	2636	C	2637	*	G	2642	G	2643	A	2644	C	2645	C	2646	G	2647	cWW			cSH	tWH	tHS	cWW
6	IL_4V9F_019	4V9F	0.1994	0	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	C	585	C	586	A	587	G	588	U	589	A	590	A	591	*	U	567	G	568	A	569	C	570	C	571	G	572	cWW	cWB		cSH	tWH	tHS	cWW
7	IL_1UN6_004	1UN6	0.2432	0	7x6 Sarcin-Ricin with UU cWW pair; G-bulge	F	5S RIBOSOMAL RNA	U	72	U	73	A	74	G	75	U	76	A	77	C	78	*	G	98	G	99	A	100	A	101	U	102	A	103	cWW	cwW	tHH	cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAGUAC*GGACCG	3
CAUAGUAC*GGAAGG	1
UUAGUAC*GGACCG	1
CCAGUAA*UGACCG	1
UUAGUAC*GGAAUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGUA*GACC	4
AUAGUA*GAAG	1
CAGUA*GACC	1
UAGUA*GAAU	1

Release history

Release	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Sarcin-Ricin target in LSU H95; G-bulge (4)
7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
8x6 Sarcin-Ricin with inserted A; G-bulge (1)
7x6 Sarcin-Ricin; G-bulge (1)
Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.24 | Max 0.59

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Coloring options: Nucleotide numbers

Motif IL_16458.1 Version IL_16458.1 of this group appears in releases 3.77 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_16458.1 Version IL_16458.1 of this group appears in releases 3.77 to 3.86

Download

Csv

Json