3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
CCC*GUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VVJ_343 not in the Motif Atlas
Homologous match to IL_4LFB_010
Geometric discrepancy: 0.121
The information below is about IL_4LFB_010
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

1VVJ|1|QA|C|186
1VVJ|1|QA|C|186|||A
1VVJ|1|QA|C|186|||B
*
1VVJ|1|QA|G|191|||E
1VVJ|1|QA|U|191|||F
1VVJ|1|QA|G|191

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QT
30S ribosomal protein S20

Coloring options:


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