IL_1VVJ_345

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

1VVJ|1|QA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_345 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.2212

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1VVJ|1|QA|G|933
1VVJ|1|QA|C|934
1VVJ|1|QA|A|935
*
1VVJ|1|QA|U|1380
1VVJ|1|QA|U|1381
1VVJ|1|QA|C|1382
1VVJ|1|QA|C|1383
1VVJ|1|QA|C|1384

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QV

Transfer RNA; tRNA