IL_1VVJ_362

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

1VVJ|1|RA|A|1045, 1VVJ|1|RA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_362 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3206

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1VVJ|1|RA|C|1043
1VVJ|1|RA|G|1044
1VVJ|1|RA|A|1045
1VVJ|1|RA|A|1046
1VVJ|1|RA|G|1047
1VVJ|1|RA|A|1048
1VVJ|1|RA|C|1049
1VVJ|1|RA|A|1050
1VVJ|1|RA|G|1051
*
1VVJ|1|RA|U|1108
1VVJ|1|RA|C|1109
1VVJ|1|RA|G|1110
1VVJ|1|RA|A|1111
1VVJ|1|RA|G|1112

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6