IL_1VW3_034

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAAGUG*CUUAAUAAUAAGAAU

Length

22 nucleotides

Bulged bases

1VW3|1|A|U|1114, 1VW3|1|A|A|1119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04397.2

Basepair signature

cWW-tWH-L-tHW-cSH-cWW

Number of instances in this motif group

5

Unit IDs

1VW3|1|A|A|943
1VW3|1|A|U|944
1VW3|1|A|A|945
1VW3|1|A|A|946
1VW3|1|A|G|947
1VW3|1|A|U|948
1VW3|1|A|G|949
*
1VW3|1|A|C|1106
1VW3|1|A|U|1107
1VW3|1|A|U|1108
1VW3|1|A|A|1109
1VW3|1|A|A|1110
1VW3|1|A|U|1111
1VW3|1|A|A|1112
1VW3|1|A|A|1113
1VW3|1|A|U|1114
1VW3|1|A|A|1115
1VW3|1|A|A|1116
1VW3|1|A|G|1117
1VW3|1|A|A|1118
1VW3|1|A|A|1119
1VW3|1|A|U|1120

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

54S ribosomal protein L9, mitochondrial