Motif IL_04397.2 Version IL_04397.2 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-4 | 2-10 | 4-9 | 4-10 | 5-6 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_039 | 2QBG | 0.1209 | 1 | B | 23S rRNA | U | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142 | A | 1144 | cWW | tWH | ntHW | cSH | cWW | |||
| 2 | IL_4IOA_035 | 4IOA | 0.0786 | 2 | X | LSU rRNA | C | 1029 | U | 1030 | C | 1031 | A | 1032 | G | 1033 | U | 1034 | G | 1035 | * | C | 1150 | U | 1151 | A | 1153 | G | 1155 | cWW | ntWH | ntHW | ntWW | cSH | cWW | ||
| 3 | IL_4QCN_038 | 4QCN | 0.0000 | 2 | A | 23S Ribosomal RNA | C | 1064 | U | 1065 | A | 1066 | A | 1067 | G | 1068 | U | 1069 | G | 1070 | * | C | 1185 | U | 1186 | A | 1188 | G | 1190 | cWW | ntWH | ntHW | ntWW | cSH | cWW | ||
| 4 | IL_1S72_041 | 1S72 | 0.0677 | 2 | Kink-turn related (H) | 0 | LSU rRNA | U | 1115 | U | 1116 | A | 1117 | A | 1118 | G | 1119 | U | 1120 | G | 1121 | * | C | 1243 | U | 1244 | A | 1246 | A | 1248 | cWW | ntHW | ntWW | cSH | cWW | ||
| 5 | IL_1VW3_034 | 1VW3 | 0.1295 | 11 | A | 21S ribosomal RNA | A | 943 | U | 944 | A | 945 | A | 946 | G | 947 | U | 948 | G | 949 | * | C | 1106 | U | 1107 | A | 1118 | U | 1120 | cWW | ncSW | ntHW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGUG*CUAAA | 1 |
| CUCAGUG*CUCAAG | 1 |
| CUAAGUG*CUUAAG | 1 |
| UUAAGUG*CUCAAA | 1 |
| AUAAGUG*CUUAAUAAUAAGAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGU*UAA | 1 |
| UCAGU*UCAA | 1 |
| UAAGU*UUAA | 1 |
| UAAGU*UCAA | 1 |
| UAAGU*UUAAUAAUAAGAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_04397.2 | Only in the parent motif |
|---|---|---|---|
| IL_04397.1 Compare | IL_1VW3_034, IL_1S72_041, IL_4IOA_035, IL_2QBG_039 | IL_4QCN_038 | IL_4NVV_041 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Kink-turn related (H) (1)
- Basepair signature
- cWW-tWH-L-tHW-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.09 | Max 0.18
Coloring options: