IL_1VW3_061

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

1VW3|1|A|A|1838, 1VW3|1|A|U|1844, 1VW3|1|A|C|1863

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15123.3

Basepair signature

cWW-L-R-cHW-L-L-L-L-L-cWW

Number of instances in this motif group

6

Unit IDs

1VW3|1|A|C|1834
1VW3|1|A|G|1835
1VW3|1|A|A|1836
1VW3|1|A|A|1837
1VW3|1|A|A|1838
1VW3|1|A|U|1839
1VW3|1|A|U|1840
1VW3|1|A|C|1841
1VW3|1|A|C|1842
1VW3|1|A|U|1843
1VW3|1|A|U|1844
1VW3|1|A|G|1845
*
1VW3|1|A|C|1861
1VW3|1|A|C|1862
1VW3|1|A|C|1863
1VW3|1|A|G|1864

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial