Motif IL_15123.3 Version IL_15123.3 of this group appears in releases 1.17 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10	break		11		12		13	1-4	1-13	2-6	3-9	3-12	6-7	6-8	6-12	10-11
1	IL_2QBG_077	2QBG	0.4133	3	B	LSU rRNA	C	1934	G	1935	A	1936	A	1937	U	1939	U	1940	C	1941	C	1942	U	1943	G	1945	*	C	1961	C	1962	G	1964		cWW							cWW
2	IL_1VW3_061	1VW3	0.1397	3	A	LSU rRNA	C	1834	G	1835	A	1836	A	1837	U	1839	U	1840	C	1841	C	1842	U	1843	G	1845	*	C	1861	C	1862	G	1864		cWW		cHW			ntSW		cWW
3	IL_4QCN_073	4QCN	0.0000	3	A	LSU rRNA	C	1956	G	1957	A	1958	A	1959	U	1961	U	1962	C	1963	C	1964	U	1965	G	1967	*	C	1983	C	1984	G	1986		cWW	ncSH	cHW		ncSH	ncSH		cWW
4	IL_4A1B_092	4A1B	0.3309	3	1	LSU rRNA	C	2272	C	2273	A	2274	A	2275	U	2277	G	2278	C	2279	C	2280	U	2281	G	2283	*	C	2299	G	2300	G	2302	ncSW	cWW		ncHW	tSs			ntHS	cWW
5	IL_4CUV_098	4CUV	0.3573	3	1	LSU rRNA	C	2277	C	2278	A	2279	A	2280	U	2282	G	2283	C	2284	C	2285	U	2286	G	2288	*	C	2304	G	2305	G	2307		cWW		cHW			ntSW	ntHh	cWW
6	IL_1VX6_097	1VX6	0.5338	3	A	LSU rRNA	C	2570	C	2571	A	2572	A	2573	U	2575	G	2576	C	2577	C	2578	U	2579	G	2581	*	C	2597	G	2598	G	2600		cWW		cHW			ntSW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCAAAUGCCUCG*CGCG	3
CGAAAUUCCUUG*CCUG	2
CGAAAUUCCUUG*CCCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAAAUGCCUC*GC	3
GAAAUUCCUU*CU	2
GAAAUUCCUU*CC	1

Release history

Release	1.17	1.18
Date	2014-09-04	2014-10-07
Status	Updated, 1 parent	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_15123.3	Only in the parent motif
IL_15123.2 Compare	IL_4CUV_098, IL_2QBG_077, IL_4A1B_092, IL_1VW3_061	IL_4QCN_073, IL_1VX6_097	IL_4NVV_077

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-L-R-cHW-L-L-L-L-L-cWW
Heat map statistics: Min 0.14 | Avg 0.35 | Max 0.67

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Coloring options: Nucleotide numbers

Motif IL_15123.3 Version IL_15123.3 of this group appears in releases 1.17 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_15123.3 Version IL_15123.3 of this group appears in releases 1.17 to 1.18

Download

Csv

Json