Motif IL_15123.3 Version IL_15123.3 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-4 | 1-13 | 2-6 | 3-9 | 3-12 | 6-7 | 6-8 | 6-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_077 | 2QBG | 0.4133 | 3 | B | LSU rRNA | C | 1934 | G | 1935 | A | 1936 | A | 1937 | U | 1939 | U | 1940 | C | 1941 | C | 1942 | U | 1943 | G | 1945 | * | C | 1961 | C | 1962 | G | 1964 | cWW | cWW | |||||||
| 2 | IL_1VW3_061 | 1VW3 | 0.1397 | 3 | A | LSU rRNA | C | 1834 | G | 1835 | A | 1836 | A | 1837 | U | 1839 | U | 1840 | C | 1841 | C | 1842 | U | 1843 | G | 1845 | * | C | 1861 | C | 1862 | G | 1864 | cWW | cHW | ntSW | cWW | |||||
| 3 | IL_4QCN_073 | 4QCN | 0.0000 | 3 | A | LSU rRNA | C | 1956 | G | 1957 | A | 1958 | A | 1959 | U | 1961 | U | 1962 | C | 1963 | C | 1964 | U | 1965 | G | 1967 | * | C | 1983 | C | 1984 | G | 1986 | cWW | ncSH | cHW | ncSH | ncSH | cWW | |||
| 4 | IL_4A1B_092 | 4A1B | 0.3309 | 3 | 1 | LSU rRNA | C | 2272 | C | 2273 | A | 2274 | A | 2275 | U | 2277 | G | 2278 | C | 2279 | C | 2280 | U | 2281 | G | 2283 | * | C | 2299 | G | 2300 | G | 2302 | ncSW | cWW | ncHW | tSs | ntHS | cWW | |||
| 5 | IL_4CUV_098 | 4CUV | 0.3573 | 3 | 1 | LSU rRNA | C | 2277 | C | 2278 | A | 2279 | A | 2280 | U | 2282 | G | 2283 | C | 2284 | C | 2285 | U | 2286 | G | 2288 | * | C | 2304 | G | 2305 | G | 2307 | cWW | cHW | ntSW | ntHh | cWW | ||||
| 6 | IL_1VX6_097 | 1VX6 | 0.5338 | 3 | A | LSU rRNA | C | 2570 | C | 2571 | A | 2572 | A | 2573 | U | 2575 | G | 2576 | C | 2577 | C | 2578 | U | 2579 | G | 2581 | * | C | 2597 | G | 2598 | G | 2600 | cWW | cHW | ntSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAAUGCCUCG*CGCG | 3 |
| CGAAAUUCCUUG*CCUG | 2 |
| CGAAAUUCCUUG*CCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAUGCCUC*GC | 3 |
| GAAAUUCCUU*CU | 2 |
| GAAAUUCCUU*CC | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_15123.3 | Only in the parent motif |
|---|---|---|---|
| IL_15123.2 Compare | IL_4CUV_098, IL_2QBG_077, IL_4A1B_092, IL_1VW3_061 | IL_4QCN_073, IL_1VX6_097 | IL_4NVV_077 |
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-cHW-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.14 | Avg 0.35 | Max 0.67
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