IL_1VW3_100

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VW3_100 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0776

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

1VW3|1|A|G|1618
1VW3|1|A|G|1619
1VW3|1|A|A|1620
1VW3|1|A|A|1621
1VW3|1|A|C|1622
1VW3|1|A|U|1623
1VW3|1|A|C|1624
1VW3|1|A|G|1625
1VW3|1|A|G|1626
*
1VW3|1|A|C|1890
1VW3|1|A|U|1891
1VW3|1|A|G|1892
1VW3|1|A|U|1893
1VW3|1|A|C|1894

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

54S ribosomal protein L9, mitochondrial