Motif IL_22854.4 Version IL_22854.4 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-11 | 4-13 | 9-10 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8CRE_082 | 8CRE | 0.1010 | 0 | 1 | LSU rRNA | G | 1894 | G | 1895 | A | 1896 | A | 1897 | G | 1898 | U | 1899 | C | 1900 | G | 1901 | G | 1902 | * | C | 2311 | U | 2312 | G | 2313 | U | 2314 | C | 2315 | cWW | tSH | tHW | cWW | cWW |
| 2 | IL_8P9A_305 | 8P9A | 0.1093 | 0 | AR | LSU rRNA | G | 1898 | G | 1899 | A | 1900 | A | 1901 | G | 1902 | U | 1903 | C | 1904 | G | 1905 | G | 1906 | * | C | 2333 | U | 2334 | G | 2335 | U | 2336 | C | 2337 | cWW | tSH | tHW | cWW | cWW |
| 3 | IL_4V9F_111 | 4V9F | 0.0861 | 0 | 0 | LSU rRNA | G | 1744 | G | 1745 | A | 1746 | A | 1747 | U | 1748 | U | 1749 | C | 1750 | G | 1751 | G | 1752 | * | C | 2031 | U | 2032 | G | 2033 | U | 2034 | C | 2035 | cWW | tSH | tHW | cWW | cWW |
| 4 | IL_4WF9_117 | 4WF9 | 0.0562 | 0 | X | LSU rRNA | G | 1710 | G | 1711 | A | 1712 | A | 1713 | C | 1714 | U | 1715 | C | 1716 | G | 1717 | G | 1718 | * | C | 2017 | U | 2018 | G | 2019 | U | 2020 | C | 2021 | cWW | tSH | tHW | cWW | cWW |
| 5 | IL_5J7L_386 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 1666 | G | 1667 | A | 1668 | A | 1669 | C | 1670 | U | 1671 | A | 1672 | G | 1673 | G | 1674 | * | C | 1990 | U | 1991 | G | 1992 | U | 1993 | C | 1994 | cWW | tSH | tHW | cWW | cWW |
| 6 | IL_9DFE_066 | 9DFE | 0.0748 | 0 | 1A | LSU rRNA | G | 1666 | G | 1667 | A | 1668 | A | 1669 | C | 1670 | U | 1671 | C | 1672 | U | 1673 | G | 1674 | * | C | 1990 | U | 1991 | G | 1992 | U | 1993 | C | 1994 | cWW | tSH | tHW | cWW | cWW |
| 7 | IL_7A0S_109 | 7A0S | 0.0877 | 0 | X | LSU rRNA | G | 1683 | G | 1684 | A | 1685 | A | 1686 | C | 1687 | U | 1688 | U | 1689 | U | 1690 | G | 1691 | * | C | 1973 | U | 1974 | G | 1975 | U | 1976 | C | 1977 | cWW | tSH | tHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAGUCGG*CUGUC | 2 |
| GGAAUUCGG*CUGUC | 1 |
| GGAACUCGG*CUGUC | 1 |
| GGAACUAGG*CUGUC | 1 |
| GGAACUCUG*CUGUC | 1 |
| GGAACUUUG*CUGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGUCG*UGU | 2 |
| GAAUUCG*UGU | 1 |
| GAACUCG*UGU | 1 |
| GAACUAG*UGU | 1 |
| GAACUCU*UGU | 1 |
| GAACUUU*UGU | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Heat map statistics
- Min 0.06 | Avg 0.08 | Max 0.13
Coloring options: