IL_1VW3_102

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

1VW3|1|A|A|3247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VW3_102 not in the Motif Atlas

Geometric match to IL_7JNH_003

Geometric discrepancy: 0.2793

The information below is about IL_7JNH_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

1VW3|1|A|G|3158
1VW3|1|A|G|3159
*
1VW3|1|A|U|3246
1VW3|1|A|A|3247
1VW3|1|A|C|3248

Current chains

Chain A

21S ribosomal RNA

Nearby chains