IL_1VWW_005

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCGAAU*ACAUGUGGC

Length

16 nucleotides

Bulged bases

1VWW|1|5|G|119, 1VWW|1|5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59563.2

Basepair signature

cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1VWW|1|5|G|116
1VWW|1|5|C|117
1VWW|1|5|C|118
1VWW|1|5|G|119
1VWW|1|5|A|120
1VWW|1|5|A|121
1VWW|1|5|U|122
*
1VWW|1|5|A|147
1VWW|1|5|C|148
1VWW|1|5|A|149
1VWW|1|5|U|150
1VWW|1|5|G|151
1VWW|1|5|U|152
1VWW|1|5|G|153
1VWW|1|5|G|154
1VWW|1|5|C|155

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA