IL_1VWW_014

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGUC*GCUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48256.1

Basepair signature

cWW-cWW

Number of instances in this motif group

360

Unit IDs

1VWW|1|5|G|442
1VWW|1|5|G|443
1VWW|1|5|G|444
1VWW|1|5|U|445
1VWW|1|5|C|446
*
1VWW|1|5|G|1300
1VWW|1|5|C|1301
1VWW|1|5|U|1302
1VWW|1|5|A|1303
1VWW|1|5|C|1304
1VWW|1|5|C|1305

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA