IL_1VWW_016

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGGAUUCAACCC*GGGCGCAUUUCCAC

Length

27 nucleotides

Bulged bases

1VWW|1|5|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|462
1VWW|1|5|A|463
1VWW|1|5|G|464
1VWW|1|5|G|465
1VWW|1|5|A|466
1VWW|1|5|U|467
1VWW|1|5|U|468
1VWW|1|5|C|469
1VWW|1|5|A|470
1VWW|1|5|A|471
1VWW|1|5|C|472
1VWW|1|5|C|473
1VWW|1|5|C|474
*
1VWW|1|5|G|680
1VWW|1|5|G|681
1VWW|1|5|G|682
1VWW|1|5|C|683
1VWW|1|5|G|684
1VWW|1|5|C|685
1VWW|1|5|A|686
1VWW|1|5|U|687
1VWW|1|5|U|688
1VWW|1|5|U|689
1VWW|1|5|C|690
1VWW|1|5|C|691
1VWW|1|5|A|692
1VWW|1|5|C|693

Current chains

Chain 5

28S ribosomal RNA

Nearby chains