IL_1VWW_017

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUCCGGCCGUGUCGG*CCCGACCGGCGACCGGC

Length

33 nucleotides

Bulged bases

1VWW|1|5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48256.1

Basepair signature

cWW-cWW

Number of instances in this motif group

360

Unit IDs

1VWW|1|5|G|482
1VWW|1|5|G|483
1VWW|1|5|U|484
1VWW|1|5|C|485
1VWW|1|5|C|486
1VWW|1|5|G|487
1VWW|1|5|G|488
1VWW|1|5|C|489
1VWW|1|5|C|490
1VWW|1|5|G|491
1VWW|1|5|U|492
1VWW|1|5|G|493
1VWW|1|5|U|494
1VWW|1|5|C|495
1VWW|1|5|G|496
1VWW|1|5|G|497
*
1VWW|1|5|C|656
1VWW|1|5|C|657
1VWW|1|5|C|658
1VWW|1|5|G|659
1VWW|1|5|A|660
1VWW|1|5|C|661
1VWW|1|5|C|662
1VWW|1|5|G|663
1VWW|1|5|G|664
1VWW|1|5|C|665
1VWW|1|5|G|666
1VWW|1|5|A|667
1VWW|1|5|C|668
1VWW|1|5|C|669
1VWW|1|5|G|670
1VWW|1|5|G|671
1VWW|1|5|C|672

Current chains

Chain 5

28S ribosomal RNA

Nearby chains