IL_1VWW_021

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

1VWW|1|5|U|513, 1VWW|1|5|U|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VWW_021 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.1799

The information below is about IL_3MXH_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

1VWW|1|5|U|512
1VWW|1|5|U|513
1VWW|1|5|U|514
1VWW|1|5|C|515
*
1VWW|1|5|G|646
1VWW|1|5|G|647

Current chains

Chain 5

28S ribosomal RNA

Nearby chains