IL_1VWW_024

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

1VWW|1|5|G|930, 1VWW|1|5|C|931, 1VWW|1|5|A|932, 1VWW|1|5|G|933, 1VWW|1|5|A|935, 1VWW|1|5|C|936, 1VWW|1|5|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92602.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

309

Unit IDs

1VWW|1|5|G|731
1VWW|1|5|A|732
1VWW|1|5|A|733
1VWW|1|5|G|734
1VWW|1|5|G|735
*
1VWW|1|5|C|928
1VWW|1|5|A|929
1VWW|1|5|G|930
1VWW|1|5|C|931
1VWW|1|5|A|932
1VWW|1|5|G|933
1VWW|1|5|C|934
1VWW|1|5|A|935
1VWW|1|5|C|936
1VWW|1|5|U|937
1VWW|1|5|C|938

Current chains

Chain 5

28S ribosomal RNA

Nearby chains