IL_1VWW_036

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCUCGCCCG*CGGGGAGGU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85975.1

Basepair signature

cWW-L-R-R-R-R-R-L-L-cWW

Number of instances in this motif group

1

Unit IDs

1VWW|1|5|G|1470
1VWW|1|5|U|1471
1VWW|1|5|C|1472
1VWW|1|5|U|1473
1VWW|1|5|C|1474
1VWW|1|5|G|1475
1VWW|1|5|C|1476
1VWW|1|5|C|1477
1VWW|1|5|C|1478
1VWW|1|5|G|1479
*
1VWW|1|5|C|1486
1VWW|1|5|G|1487
1VWW|1|5|G|1488
1VWW|1|5|G|1489
1VWW|1|5|G|1490
1VWW|1|5|A|1491
1VWW|1|5|G|1492
1VWW|1|5|G|1493
1VWW|1|5|U|1494

Current chains

Chain 5

28S ribosomal RNA

Nearby chains