3D structure

PDB id
1VWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUCUCGCCCG*CGGGGAGGU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85975.1
Basepair signature
cWW-L-R-R-R-R-R-L-L-cWW
Number of instances in this motif group
1

Unit IDs

1VWW|1|5|G|1470
1VWW|1|5|U|1471
1VWW|1|5|C|1472
1VWW|1|5|U|1473
1VWW|1|5|C|1474
1VWW|1|5|G|1475
1VWW|1|5|C|1476
1VWW|1|5|C|1477
1VWW|1|5|C|1478
1VWW|1|5|G|1479
*
1VWW|1|5|C|1486
1VWW|1|5|G|1487
1VWW|1|5|G|1488
1VWW|1|5|G|1489
1VWW|1|5|G|1490
1VWW|1|5|A|1491
1VWW|1|5|G|1492
1VWW|1|5|G|1493
1VWW|1|5|U|1494

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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